Index
A
|
B
|
C
|
D
|
E
|
G
|
H
|
I
|
K
|
L
|
M
|
N
|
P
|
Q
|
R
|
S
|
T
|
U
|
W
|
Z
A
adjust_seq_length() (iss.error_models.ErrorModel method)
B
BasicErrorModel (class in iss.error_models.basic)
C
cleanup() (in module iss.util)
compress() (in module iss.util)
concatenate() (in module iss.util)
convert_n_reads() (in module iss.util)
count_records() (in module iss.util)
coverage_scaling() (in module iss.abundance)
D
dispatch_indels() (in module iss.modeller)
dispatch_subst() (in module iss.modeller)
divide_qualities_into_bins() (in module iss.modeller)
draft() (in module iss.abundance)
dump() (in module iss.util)
E
ErrorModel (class in iss.error_models)
expand_draft_abundance() (in module iss.abundance)
exponential() (in module iss.abundance)
G
gen_phred_scores() (iss.error_models.basic.BasicErrorModel method)
(iss.error_models.kde.KDErrorModel method)
generate_reads() (in module iss.app)
generate_work_divider() (in module iss.generator)
genome_file_exists() (in module iss.util)
H
halfnormal() (in module iss.abundance)
I
indel_matrix_to_choices() (in module iss.modeller)
insert_size() (in module iss.modeller)
introduce_error_scores() (iss.error_models.ErrorModel method)
introduce_indels() (iss.error_models.ErrorModel method)
iss
module
iss.abundance
module
iss.app
module
iss.bam
module
iss.error_models
module
iss.error_models.basic
module
iss.error_models.kde
module
iss.generator
module
iss.modeller
module
iss.util
module
K
KDErrorModel (class in iss.error_models.kde)
L
load() (in module iss.util)
load_error_model() (in module iss.generator)
load_genomes() (in module iss.generator)
load_npz() (iss.error_models.ErrorModel method)
load_readcount_or_abundance() (in module iss.generator)
logger (iss.error_models.ErrorModel property)
lognormal() (in module iss.abundance)
M
main() (in module iss.app)
model_from_bam() (in module iss.app)
module
iss
iss.abundance
iss.app
iss.bam
iss.error_models
iss.error_models.basic
iss.error_models.kde
iss.generator
iss.modeller
iss.util
mut_sequence() (iss.error_models.ErrorModel method)
N
nplog() (in module iss.util)
P
parse_abundance_file() (in module iss.abundance)
parse_readcount_file() (in module iss.abundance)
phred_to_prob() (in module iss.util)
prob_to_phred() (in module iss.util)
Q
quality_bins_to_histogram() (in module iss.modeller)
R
random() (in module iss.bam)
random_insert_size() (iss.error_models.basic.BasicErrorModel method)
(iss.error_models.kde.KDErrorModel method)
raw_qualities_to_histogram() (in module iss.modeller)
read_bam() (in module iss.bam)
reads_generator() (in module iss.generator)
reservoir() (in module iss.util)
rev_comp() (in module iss.util)
S
simulate_read() (in module iss.generator)
simulate_reads() (in module iss.generator)
split_list() (in module iss.util)
subst_matrix_to_choices() (in module iss.modeller)
T
to_coverage() (in module iss.abundance)
to_fastq() (in module iss.generator)
to_file() (in module iss.abundance)
to_model() (in module iss.bam)
U
uniform() (in module iss.abundance)
W
worker_iterator() (in module iss.generator)
write_mutations() (in module iss.generator)
write_to_file() (in module iss.bam)
Z
zero_inflated_lognormal() (in module iss.abundance)
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