InSilicoSeq is a sequencing simulator producing realistic Illumina reads. Primarily intended for simulating metagenomic samples, it can also be used to produce sequencing data from a single genome.

InSilicoSeq is written in python, and use kernel density estimators to model the read quality of real sequencing data.

InSilicoSeq support substitution, insertion, deletion errors, and models gc bias and insert size distribution.


Authors: Hadrien Gourlé, Juliette Hayer, Oskar E. Karlsson and Erik Bomgcam-Rudloff Contact: `<>`_ GitHub: `<>`_ License: MIT

Indices and tables

This documentation was generated on 2018-06-02 at 10:30.